After changing the configuration options you have to restart the server to make sure these changes are taken into effect.
The base URL is the URL by which users can access this server from outside your domain.
By default the client address is recorded in the log file, but if the server is behind a reverse proxy, the last X-Forwarded-For entry might be more informative.
Leave empty to disable web service
XML parsers are not configurable in the admin pages yet
Perl based parsers should be edited directly, you can find the file for the ${parser.id} parser at ${global.dirs['parser'] + '/' + parser.script + '.pm'}
${parser.id}
${global.dirs['parser'] + '/' + parser.script + '.pm'}
Formatting a document can be done using JavaScript plugins. To specify a script for the ${format.id} format choose one from the list here which is based on the files found in ${global.dirs['docroot']}/formats.
${global.dirs['docroot']}/formats
Create 'live' links in documents based on a regular expression. You can reference captures in the regular expression using the variable names $1 for the first capture, $2 for the second, etc.
Aliases are used in the Blast form and in creating links between databanks based on the values found in e.g. db_xref records. The name is used in the blast databank popup menu.
The source files are expected to be located relative to the raw directory, unless you enter an absolute path.
Upstream URL can either be ftp:// or rsync://
FastA file is needed to be able to use the blast search function.
Filters are optional programs through which the raw data is fed, for the Gene databank you could e.g. enter /usr/bin/gene2xml -bT to convert ASN.1 into XML on the fly.
/usr/bin/gene2xml -bT
Formatting can be done with one of the defined formatters, or for XML databanks, with an XML Stylesheet.
Enter the time for daily updates and the week day for weekly updates. Monthly updates are done on the first week day of the calender month.