43#ifndef PANZER_STK_MODEL_EVALUATOR_FACTORY_T_HPP
44#define PANZER_STK_MODEL_EVALUATOR_FACTORY_T_HPP
46#include "Thyra_ModelEvaluator.hpp"
47#include "Teuchos_Assert.hpp"
48#include "Teuchos_as.hpp"
49#include "Teuchos_DefaultMpiComm.hpp"
50#include "Teuchos_AbstractFactoryStd.hpp"
52#include "PanzerAdaptersSTK_config.hpp"
63#include "Panzer_TpetraLinearObjFactory.hpp"
93#ifdef PANZER_HAVE_TEMPUS
108#include "Thyra_EpetraModelEvaluator.hpp"
109#include "Piro_ConfigDefs.hpp"
110#include "Piro_NOXSolver.hpp"
111#include "Piro_LOCASolver.hpp"
112#include "Piro_RythmosSolver.hpp"
113#ifdef PANZER_HAVE_TEMPUS
114#include "Piro_TempusSolverForwardOnly.hpp"
121 template<
typename ScalarT>
124 paramList->validateParametersAndSetDefaults(*this->getValidParameters());
128 if(!paramList->sublist(
"Initial Conditions").isType<
bool>(
"Zero Initial Conditions"))
129 paramList->sublist(
"Initial Conditions").set<
bool>(
"Zero Initial Conditions",
false);
131 paramList->sublist(
"Initial Conditions").sublist(
"Vector File").validateParametersAndSetDefaults(
132 getValidParameters()->sublist(
"Initial Conditions").sublist(
"Vector File"));
134 this->setMyParamList(paramList);
137 template<
typename ScalarT>
140 static Teuchos::RCP<const Teuchos::ParameterList> validPL;
141 if (is_null(validPL)) {
142 Teuchos::RCP<Teuchos::ParameterList> pl = Teuchos::rcp(
new Teuchos::ParameterList());
144 pl->sublist(
"Physics Blocks").disableRecursiveValidation();
145 pl->sublist(
"Closure Models").disableRecursiveValidation();
146 pl->sublist(
"Boundary Conditions").disableRecursiveValidation();
147 pl->sublist(
"Solution Control").disableRecursiveValidation();
148 pl->set<
bool>(
"Use Discrete Adjoint",
false);
150 pl->sublist(
"Mesh").disableRecursiveValidation();
152 pl->sublist(
"Initial Conditions").set<
bool>(
"Zero Initial Conditions",
false);
153 pl->sublist(
"Initial Conditions").sublist(
"Transient Parameters").disableRecursiveValidation();
154 pl->sublist(
"Initial Conditions").sublist(
"Vector File");
155 pl->sublist(
"Initial Conditions").sublist(
"Vector File").set(
"File Name",
"");
156 pl->sublist(
"Initial Conditions").sublist(
"Vector File").set<
bool>(
"Enabled",
false);
157 pl->sublist(
"Initial Conditions").disableRecursiveValidation();
159 pl->sublist(
"Output").set(
"File Name",
"panzer.exo");
160 pl->sublist(
"Output").set(
"Write to Exodus",
true);
161 pl->sublist(
"Output").sublist(
"Cell Average Quantities").disableRecursiveValidation();
162 pl->sublist(
"Output").sublist(
"Cell Quantities").disableRecursiveValidation();
163 pl->sublist(
"Output").sublist(
"Cell Average Vectors").disableRecursiveValidation();
164 pl->sublist(
"Output").sublist(
"Nodal Quantities").disableRecursiveValidation();
165 pl->sublist(
"Output").sublist(
"Allocate Nodal Quantities").disableRecursiveValidation();
169 Teuchos::ParameterList& p = pl->sublist(
"Assembly");
170 p.set<
int>(
"Workset Size", 1);
171 p.set<
int>(
"Default Integration Order",-1);
172 p.set<std::string>(
"Field Order",
"");
173 p.set<std::string>(
"Auxiliary Field Order",
"");
174 p.set<
bool>(
"Use DOFManager FEI",
false);
175 p.set<
bool>(
"Load Balance DOFs",
false);
176 p.set<
bool>(
"Use Tpetra",
false);
177 p.set<
bool>(
"Use Epetra ME",
true);
178 p.set<
bool>(
"Lump Explicit Mass",
false);
179 p.set<
bool>(
"Constant Mass Matrix",
true);
180 p.set<
bool>(
"Apply Mass Matrix Inverse in Explicit Evaluator",
true);
181 p.set<
bool>(
"Use Conservative IMEX",
false);
182 p.set<
bool>(
"Compute Real Time Derivative",
false);
183 p.set<
bool>(
"Use Time Derivative in Explicit Model",
false);
184 p.set<
bool>(
"Compute Time Derivative at Time Step",
false);
185 p.set<Teuchos::RCP<const panzer::EquationSetFactory> >(
"Equation Set Factory", Teuchos::null);
186 p.set<Teuchos::RCP<const panzer::ClosureModelFactory_TemplateManager<panzer::Traits> > >(
"Closure Model Factory", Teuchos::null);
187 p.set<Teuchos::RCP<const panzer::BCStrategyFactory> >(
"BC Factory",Teuchos::null);
188 p.set<std::string>(
"Excluded Blocks",
"");
189 p.sublist(
"ALE").disableRecursiveValidation();
192 pl->sublist(
"Block ID to Physics ID Mapping").disableRecursiveValidation();
193 pl->sublist(
"Options").disableRecursiveValidation();
194 pl->sublist(
"Active Parameters").disableRecursiveValidation();
195 pl->sublist(
"Controls").disableRecursiveValidation();
196 pl->sublist(
"ALE").disableRecursiveValidation();
197 pl->sublist(
"User Data").disableRecursiveValidation();
198 pl->sublist(
"User Data").sublist(
"Panzer Data").disableRecursiveValidation();
206 bool hasInterfaceCondition(
const std::vector<panzer::BC>& bcs)
208 for (std::vector<panzer::BC>::const_iterator bcit = bcs.begin(); bcit != bcs.end(); ++bcit)
214 Teuchos::RCP<STKConnManager>
215 getSTKConnManager(
const Teuchos::RCP<panzer::ConnManager>& conn_mgr)
217 const Teuchos::RCP<STKConnManager> stk_conn_mgr =
218 Teuchos::rcp_dynamic_cast<STKConnManager>(conn_mgr);
219 TEUCHOS_TEST_FOR_EXCEPTION(stk_conn_mgr.is_null(), std::logic_error,
220 "There are interface conditions, but the connection manager"
221 " does not support the necessary connections.");
225 void buildInterfaceConnections(
const std::vector<panzer::BC>& bcs,
226 const Teuchos::RCP<panzer::ConnManager>& conn_mgr)
228 const Teuchos::RCP<STKConnManager> stk_conn_mgr = getSTKConnManager(conn_mgr);
229 for (std::vector<panzer::BC>::const_iterator bcit = bcs.begin(); bcit != bcs.end(); ++bcit)
231 stk_conn_mgr->associateElementsInSideset(bcit->sidesetID());
234 void checkInterfaceConnections(
const Teuchos::RCP<panzer::ConnManager>& conn_mgr,
235 const Teuchos::RCP<Teuchos::Comm<int> >& comm)
237 const Teuchos::RCP<STKConnManager> stk_conn_mgr = getSTKConnManager(conn_mgr);
238 std::vector<std::string> sidesets = stk_conn_mgr->checkAssociateElementsInSidesets(*comm);
239 if ( ! sidesets.empty()) {
240 std::stringstream ss;
242 for (std::size_t i = 0; i < sidesets.size(); ++i)
243 ss <<
" " << sidesets[i];
244 ss <<
" did not yield associations, but these sidesets correspond to BCT_Interface BCs.";
245 TEUCHOS_TEST_FOR_EXCEPTION(
true, std::logic_error, ss.str());
250 template<
typename ScalarT>
252 const Teuchos::RCP<panzer::GlobalData>& global_data,
253 const Teuchos::RCP<const panzer::EquationSetFactory>& eqset_factory,
256 bool meConstructionOn)
258 TEUCHOS_TEST_FOR_EXCEPTION(Teuchos::is_null(this->getParameterList()), std::runtime_error,
259 "ParameterList must be set before objects can be built!");
261 TEUCHOS_ASSERT(nonnull(comm));
262 TEUCHOS_ASSERT(nonnull(global_data));
263 TEUCHOS_ASSERT(nonnull(global_data->os));
264 TEUCHOS_ASSERT(nonnull(global_data->pl));
267 m_global_data = global_data;
279 Teuchos::ParameterList& p = *this->getNonconstParameterList();
282 Teuchos::ParameterList & mesh_params = p.sublist(
"Mesh");
283 Teuchos::ParameterList & assembly_params = p.sublist(
"Assembly");
284 Teuchos::ParameterList & solncntl_params = p.sublist(
"Solution Control");
285 Teuchos::ParameterList & output_list = p.sublist(
"Output");
287 Teuchos::ParameterList & user_data_params = p.sublist(
"User Data");
288 Teuchos::ParameterList & panzer_data_params = user_data_params.sublist(
"Panzer Data");
290 Teuchos::RCP<Teuchos::ParameterList> physics_block_plist = Teuchos::sublist(this->getMyNonconstParamList(),
"Physics Blocks");
293 std::size_t workset_size = Teuchos::as<std::size_t>(assembly_params.get<
int>(
"Workset Size"));
294 std::string field_order = assembly_params.get<std::string>(
"Field Order");
296 bool use_dofmanager_fei = assembly_params.get<
bool>(
"Use DOFManager FEI");
297 bool use_load_balance = assembly_params.get<
bool>(
"Load Balance DOFs");
298 bool useTpetra = assembly_params.get<
bool>(
"Use Tpetra");
299 bool useThyraME = !assembly_params.get<
bool>(
"Use Epetra ME");
303 bool is_transient = (solncntl_params.get<std::string>(
"Piro Solver") ==
"Rythmos" ||
304 solncntl_params.get<std::string>(
"Piro Solver") ==
"Tempus") ?
true :
false;
306 if (solncntl_params.get<std::string>(
"Piro Solver") ==
"NOX") {
307 if (solncntl_params.sublist(
"NOX").get<std::string>(
"Nonlinear Solver") ==
"Pseudo-Transient")
312 if (solncntl_params.get<std::string>(
"Piro Solver") ==
"LOCA") {
313 if (solncntl_params.sublist(
"LOCA").sublist(
"Stepper").get<
bool>(
"Compute Eigenvalues"))
316 m_is_transient = is_transient;
318 useDiscreteAdjoint = p.get<
bool>(
"Use Discrete Adjoint");
326 Teuchos::FancyOStream& fout = *global_data->os;
329 const Teuchos::RCP<const Teuchos::MpiComm<int> > mpi_comm =
330 Teuchos::rcp_dynamic_cast<const Teuchos::MpiComm<int> >(comm);
335 Teuchos::RCP<panzer_stk::STK_MeshFactory> mesh_factory = this->buildSTKMeshFactory(mesh_params);
336 Teuchos::RCP<panzer_stk::STK_Interface> mesh = mesh_factory->buildUncommitedMesh(*(mpi_comm->getRawMpiComm()));
339 m_eqset_factory = eqset_factory;
344 std::vector<Teuchos::RCP<panzer::PhysicsBlock> > physicsBlocks;
347 std::map<std::string,std::string> block_ids_to_physics_ids;
351 std::map<std::string,Teuchos::RCP<const shards::CellTopology> > block_ids_to_cell_topo;
352 for(std::map<std::string,std::string>::const_iterator itr=block_ids_to_physics_ids.begin();
353 itr!=block_ids_to_physics_ids.end();++itr) {
354 block_ids_to_cell_topo[itr->first] = mesh->getCellTopology(itr->first);
355 TEUCHOS_ASSERT(block_ids_to_cell_topo[itr->first]!=Teuchos::null);
360 panzer::buildPhysicsBlocks(block_ids_to_physics_ids,
361 block_ids_to_cell_topo,
363 assembly_params.get<
int>(
"Default Integration Order"),
369 m_physics_blocks = physicsBlocks;
374 addUserFieldsToMesh(*mesh,output_list);
381 this->finalizeMeshConstruction(*mesh_factory,physicsBlocks,*mpi_comm,*mesh);
383 fout <<
"*****************************************\n\n";
384 fout <<
"Element block exception, could not finalize the mesh, printing block and sideset information:\n";
386 mesh->printMetaData(fout);
392 fout <<
"*****************************************\n\n";
393 fout <<
"Sideset exception, could not finalize the mesh, printing block and sideset information:\n";
395 mesh->printMetaData(fout);
403 if(p.sublist(
"Output").get<
bool>(
"Write to Exodus"))
404 mesh->setupExodusFile(p.sublist(
"Output").get<std::string>(
"File Name"));
408 Teuchos::RCP<panzer_stk::WorksetFactory> wkstFactory;
409 if(m_user_wkst_factory==Teuchos::null)
412 wkstFactory = m_user_wkst_factory;
415 wkstFactory->setMesh(mesh);
419 std::vector<panzer::BC> bcs;
420 panzer::buildBCs(bcs, p.sublist(
"Boundary Conditions"), global_data);
425 m_conn_manager = conn_manager;
430 Teuchos::RCP<panzer::LinearObjFactory<panzer::Traits> > linObjFactory;
431 Teuchos::RCP<panzer::GlobalIndexer> globalIndexer;
433 std::string loadBalanceString =
"";
434 bool blockedAssembly =
false;
436 const bool has_interface_condition = hasInterfaceCondition(bcs);
441 TEUCHOS_TEST_FOR_EXCEPTION(has_interface_condition,
442 Teuchos::Exceptions::InvalidParameter,
443 "ERROR: Blocked Epetra systems cannot handle interface conditions.");
446 blockedAssembly =
true;
451 Teuchos::RCP<panzer::GlobalIndexer> dofManager
452 = globalIndexerFactory.
buildGlobalIndexer(mpi_comm->getRawMpiComm(),physicsBlocks,conn_manager,field_order);
453 globalIndexer = dofManager;
455 Teuchos::RCP<panzer::BlockedEpetraLinearObjFactory<panzer::Traits,int> > bloLinObjFactory
457 Teuchos::rcp_dynamic_cast<panzer::BlockedDOFManager>(dofManager)));
460 const std::string excludedBlocks = assembly_params.get<std::string>(
"Excluded Blocks");
461 std::vector<std::string> stringPairs;
463 for(std::size_t i=0;i<stringPairs.size();i++) {
464 std::vector<std::string> sPair;
465 std::vector<int> iPair;
469 TEUCHOS_TEST_FOR_EXCEPTION(iPair.size()!=2,std::logic_error,
470 "Input Error: The correct format for \"Excluded Blocks\" parameter in \"Assembly\" sub list is:\n"
471 " <int>,<int>; <int>,<int>; ...; <int>,<int>\n"
472 "Failure on string pair " << stringPairs[i] <<
"!");
474 bloLinObjFactory->addExcludedPair(iPair[0],iPair[1]);
477 linObjFactory = bloLinObjFactory;
480 loadBalanceString = printUGILoadBalancingInformation(*dofManager);
485 TEUCHOS_TEST_FOR_EXCEPTION(has_interface_condition,
486 Teuchos::Exceptions::InvalidParameter,
487 "ERROR: Blocked Tpetra system cannot handle interface conditions.");
490 blockedAssembly =
true;
492 TEUCHOS_ASSERT(!use_dofmanager_fei);
496 Teuchos::RCP<panzer::GlobalIndexer> dofManager
497 = globalIndexerFactory.
buildGlobalIndexer(mpi_comm->getRawMpiComm(),physicsBlocks,conn_manager,field_order);
498 globalIndexer = dofManager;
500 Teuchos::RCP<panzer::BlockedTpetraLinearObjFactory<panzer::Traits,double,int,panzer::GlobalOrdinal> > bloLinObjFactory
502 Teuchos::rcp_dynamic_cast<panzer::BlockedDOFManager>(dofManager)));
505 const std::string excludedBlocks = assembly_params.get<std::string>(
"Excluded Blocks");
506 std::vector<std::string> stringPairs;
508 for(std::size_t i=0;i<stringPairs.size();i++) {
509 std::vector<std::string> sPair;
510 std::vector<int> iPair;
514 TEUCHOS_TEST_FOR_EXCEPTION(iPair.size()!=2,std::logic_error,
515 "Input Error: The correct format for \"Excluded Blocks\" parameter in \"Assembly\" sub list is:\n"
516 " <int>,<int>; <int>,<int>; ...; <int>,<int>\n"
517 "Failure on string pair " << stringPairs[i] <<
"!");
519 bloLinObjFactory->addExcludedPair(iPair[0],iPair[1]);
522 linObjFactory = bloLinObjFactory;
525 loadBalanceString = printUGILoadBalancingInformation(*dofManager);
529 if (has_interface_condition)
530 buildInterfaceConnections(bcs, conn_manager);
534 TEUCHOS_ASSERT(!use_dofmanager_fei);
538 Teuchos::RCP<panzer::GlobalIndexer> dofManager
539 = globalIndexerFactory.
buildGlobalIndexer(mpi_comm->getRawMpiComm(),physicsBlocks,conn_manager,field_order);
540 globalIndexer = dofManager;
542 if (has_interface_condition)
543 checkInterfaceConnections(conn_manager, dofManager->getComm());
545 TEUCHOS_ASSERT(!useDiscreteAdjoint);
549 loadBalanceString = printUGILoadBalancingInformation(*dofManager);
553 if (has_interface_condition)
554 buildInterfaceConnections(bcs, conn_manager);
561 Teuchos::RCP<panzer::GlobalIndexer> dofManager
562 = globalIndexerFactory.
buildGlobalIndexer(mpi_comm->getRawMpiComm(),physicsBlocks,conn_manager,
564 globalIndexer = dofManager;
566 if (has_interface_condition)
567 checkInterfaceConnections(conn_manager, dofManager->getComm());
572 loadBalanceString = printUGILoadBalancingInformation(*dofManager);
575 TEUCHOS_ASSERT(globalIndexer!=Teuchos::null);
576 TEUCHOS_ASSERT(linObjFactory!=Teuchos::null);
577 m_global_indexer = globalIndexer;
578 m_lin_obj_factory = linObjFactory;
579 m_blockedAssembly = blockedAssembly;
582 fout <<
"Degree of freedom load balancing: " << loadBalanceString << std::endl;
588 std::map<std::string,panzer::WorksetNeeds> needs;
589 for(std::size_t i=0;i<physicsBlocks.size();i++)
590 needs[physicsBlocks[i]->elementBlockID()] = physicsBlocks[i]->getWorksetNeeds();
592 Teuchos::RCP<panzer::WorksetContainer> wkstContainer
595 wkstContainer->setWorksetSize(workset_size);
596 wkstContainer->setGlobalIndexer(globalIndexer);
598 m_wkstContainer = wkstContainer;
601 std::size_t max_wksets = 0;
602 for(std::size_t pb=0;pb<physicsBlocks.size();pb++) {
604 Teuchos::RCP< std::vector<panzer::Workset> >works = wkstContainer->getWorksets(wd);
605 max_wksets = std::max(max_wksets,works->size());
607 user_data_params.set<std::size_t>(
"Max Worksets",max_wksets);
608 wkstContainer->clear();
615 useDynamicCoordinates_ =
false;
616 for(std::size_t pb=0;pb<physicsBlocks.size();pb++) {
617 if(physicsBlocks[pb]->getCoordinateDOFs().size()>0) {
618 mesh->setUseFieldCoordinates(
true);
619 useDynamicCoordinates_ =
true;
620 wkstContainer->clear();
629 panzer_data_params.set(
"STK Mesh", mesh);
630 panzer_data_params.set(
"DOF Manager", globalIndexer);
631 panzer_data_params.set(
"Linear Object Factory", linObjFactory);
636 if(!meConstructionOn)
642 std::vector<Teuchos::RCP<Teuchos::Array<std::string> > > p_names;
643 std::vector<Teuchos::RCP<Teuchos::Array<double> > > p_values;
644 if (p.isSublist(
"Active Parameters")) {
645 Teuchos::ParameterList& active_params = p.sublist(
"Active Parameters");
647 int num_param_vecs = active_params.get<
int>(
"Number of Parameter Vectors",0);
648 p_names.resize(num_param_vecs);
649 p_values.resize(num_param_vecs);
650 for (
int i=0; i<num_param_vecs; i++) {
651 std::stringstream ss;
652 ss <<
"Parameter Vector " << i;
653 Teuchos::ParameterList& pList = active_params.sublist(ss.str());
654 int numParameters = pList.get<
int>(
"Number");
655 TEUCHOS_TEST_FOR_EXCEPTION(numParameters == 0,
656 Teuchos::Exceptions::InvalidParameter,
657 std::endl <<
"Error! panzer::ModelEvaluator::ModelEvaluator(): " <<
658 "Parameter vector " << i <<
" has zero parameters!" << std::endl);
660 Teuchos::rcp(
new Teuchos::Array<std::string>(numParameters));
662 Teuchos::rcp(
new Teuchos::Array<double>(numParameters));
663 for (
int j=0; j<numParameters; j++) {
664 std::stringstream ss2;
665 ss2 <<
"Parameter " << j;
666 (*p_names[i])[j] = pList.get<std::string>(ss2.str());
669 ss2 <<
"Initial Value " << j;
670 (*p_values[i])[j] = pList.get<
double>(ss2.str());
683 cm_factory.buildObjects(io_cm_builder);
688 Teuchos::RCP<panzer::FieldManagerBuilder> fmb;
690 bool write_dot_files = p.sublist(
"Options").get(
"Write Volume Assembly Graphs",
false);
691 std::string dot_file_prefix = p.sublist(
"Options").get(
"Volume Assembly Graph Prefix",
"Panzer_AssemblyGraph");
692 bool write_fm_files = p.sublist(
"Options").get(
"Write Field Manager Files",
false);
693 std::string fm_file_prefix = p.sublist(
"Options").get(
"Field Manager File Prefix",
"Panzer_AssemblyGraph");
697 auto check_write_dag = std::getenv(
"PANZER_WRITE_DAG");
698 if (check_write_dag !=
nullptr) {
699 write_dot_files =
true;
700 write_fm_files =
true;
704 fmb = buildFieldManagerBuilder(wkstContainer,physicsBlocks,bcs,*eqset_factory,bc_factory,cm_factory,
705 user_cm_factory,p.sublist(
"Closure Models"),*linObjFactory,user_data_params,
706 write_dot_files,dot_file_prefix,
707 write_fm_files,fm_file_prefix);
716 bool write_dot_files =
false;
717 std::string prefix =
"Panzer_ResponseGraph_";
718 write_dot_files = p.sublist(
"Options").get(
"Write Volume Response Graphs",write_dot_files);
719 prefix = p.sublist(
"Options").get(
"Volume Response Graph Prefix",prefix);
721 Teuchos::ParameterList user_data(p.sublist(
"User Data"));
722 user_data.set<
int>(
"Workset Size",workset_size);
728 Teuchos::RCP<Thyra::LinearOpWithSolveFactoryBase<double> > lowsFactory =
736 t_init = this->getInitialTime(p.sublist(
"Initial Conditions").sublist(
"Transient Parameters"), *mesh);
738 if(blockedAssembly || useTpetra)
741 Teuchos::RCP<Thyra::ModelEvaluatorDefaultBase<double> > thyra_me
742 = buildPhysicsModelEvaluator(useThyraME,
759 const Teuchos::ParameterList& models = p.sublist(
"Closure Models");
760 Teuchos::ParameterList cl_models(models.name());
761 for (Teuchos::ParameterList::ConstIterator model_it=models.begin();
762 model_it!=models.end(); ++model_it) {
763 std::string key = model_it->first;
764 if (model_it->first !=
"Global MMS Parameters")
765 cl_models.setEntry(key,model_it->second);
767 bool write_dot_files =
false;
768 std::string prefix =
"Panzer_AssemblyGraph_";
769 setupInitialConditions(*thyra_me,*wkstContainer,physicsBlocks,user_cm_factory,*linObjFactory,
771 p.sublist(
"Initial Conditions"),
772 p.sublist(
"User Data"),
773 p.sublist(
"Options").get(
"Write Volume Assembly Graphs",write_dot_files),
774 p.sublist(
"Options").get(
"Volume Assembly Graph Prefix",prefix));
779 writeInitialConditions(*thyra_me,physicsBlocks,wkstContainer,globalIndexer,linObjFactory,mesh,user_cm_factory,
780 p.sublist(
"Closure Models"),
781 p.sublist(
"User Data"),workset_size);
783 m_physics_me = thyra_me;
786 template<
typename ScalarT>
791 const Teuchos::ParameterList & cellAvgQuants = output_list.sublist(
"Cell Average Quantities");
792 for(Teuchos::ParameterList::ConstIterator itr=cellAvgQuants.begin();
793 itr!=cellAvgQuants.end();++itr) {
794 const std::string & blockId = itr->first;
795 const std::string & fields = Teuchos::any_cast<std::string>(itr->second.getAny());
796 std::vector<std::string> tokens;
801 for(std::size_t i=0;i<tokens.size();i++)
808 const Teuchos::ParameterList & cellAvgVectors = output_list.sublist(
"Cell Average Vectors");
809 for(Teuchos::ParameterList::ConstIterator itr = cellAvgVectors.begin();
810 itr != cellAvgVectors.end(); ++itr) {
811 const std::string & blockId = itr->first;
812 const std::string & fields = Teuchos::any_cast<std::string>(itr->second.getAny());
813 std::vector<std::string> tokens;
818 for(std::size_t i = 0; i < tokens.size(); i++) {
819 std::string d_mod[3] = {
"X",
"Y",
"Z"};
826 const Teuchos::ParameterList & cellQuants = output_list.sublist(
"Cell Quantities");
827 for(Teuchos::ParameterList::ConstIterator itr=cellQuants.begin();
828 itr!=cellQuants.end();++itr) {
829 const std::string & blockId = itr->first;
830 const std::string & fields = Teuchos::any_cast<std::string>(itr->second.getAny());
831 std::vector<std::string> tokens;
836 for(std::size_t i=0;i<tokens.size();i++)
841 const Teuchos::ParameterList & nodalQuants = output_list.sublist(
"Nodal Quantities");
842 for(Teuchos::ParameterList::ConstIterator itr=nodalQuants.begin();
843 itr!=nodalQuants.end();++itr) {
844 const std::string & blockId = itr->first;
845 const std::string & fields = Teuchos::any_cast<std::string>(itr->second.getAny());
846 std::vector<std::string> tokens;
851 for(std::size_t i=0;i<tokens.size();i++)
855 const Teuchos::ParameterList & allocNodalQuants = output_list.sublist(
"Allocate Nodal Quantities");
856 for(Teuchos::ParameterList::ConstIterator itr=allocNodalQuants.begin();
857 itr!=allocNodalQuants.end();++itr) {
858 const std::string & blockId = itr->first;
859 const std::string & fields = Teuchos::any_cast<std::string>(itr->second.getAny());
860 std::vector<std::string> tokens;
865 for(std::size_t i=0;i<tokens.size();i++)
870 template<
typename ScalarT>
874 const std::vector<Teuchos::RCP<panzer::PhysicsBlock> >& physicsBlocks,
877 const Teuchos::ParameterList & closure_pl,
878 const Teuchos::ParameterList & initial_cond_pl,
879 const Teuchos::ParameterList & user_data_pl,
880 bool write_dot_files,
const std::string & dot_file_prefix)
const
884 Thyra::ModelEvaluatorBase::InArgs<double> nomValues = model.getNominalValues();
885 Teuchos::RCP<Thyra::VectorBase<double> > x_vec = Teuchos::rcp_const_cast<Thyra::VectorBase<double> >(nomValues.get_x());
887 if(initial_cond_pl.get<
bool>(
"Zero Initial Conditions")) {
889 Thyra::assign(x_vec.ptr(),0.0);
891 else if(!initial_cond_pl.sublist(
"Vector File").get<
bool>(
"Enabled")) {
894 std::map<std::string, Teuchos::RCP< PHX::FieldManager<panzer::Traits> > > phx_ic_field_managers;
905 phx_ic_field_managers);
920 Teuchos::RCP<panzer::ThyraObjContainer<double> > tloc = Teuchos::rcp_dynamic_cast<panzer::ThyraObjContainer<double> >(loc);
921 tloc->set_x_th(x_vec);
926 const std::string & vectorFile = initial_cond_pl.sublist(
"Vector File").get<std::string>(
"File Name");
927 TEUCHOS_TEST_FOR_EXCEPTION(vectorFile==
"",std::runtime_error,
928 "If \"Read From Vector File\" is true, then parameter \"Vector File\" cannot be the empty string.");
932 Teuchos::RCP<panzer::ThyraObjContainer<double> > tloc = Teuchos::rcp_dynamic_cast<panzer::ThyraObjContainer<double> >(loc);
933 tloc->set_x_th(x_vec);
940 template<
typename ScalarT>
943 const std::vector<Teuchos::RCP<panzer::PhysicsBlock> >& physicsBlocks,
944 const Teuchos::RCP<panzer::WorksetContainer> & wc,
945 const Teuchos::RCP<const panzer::GlobalIndexer> & ugi,
947 const Teuchos::RCP<panzer_stk::STK_Interface> & mesh,
949 const Teuchos::ParameterList & closure_model_pl,
950 const Teuchos::ParameterList & user_data_pl,
951 int workset_size)
const
953 Teuchos::RCP<panzer::LinearObjContainer> loc = lof->buildLinearObjContainer();
954 Teuchos::RCP<panzer::ThyraObjContainer<double> > tloc = Teuchos::rcp_dynamic_cast<panzer::ThyraObjContainer<double> >(loc);
957 Teuchos::RCP<panzer::ResponseLibrary<panzer::Traits> > solnWriter
958 = initializeSolnWriterResponseLibrary(wc,ugi,lof,mesh);
961 Teuchos::ParameterList user_data(user_data_pl);
962 user_data.set<
int>(
"Workset Size",workset_size);
964 finalizeSolnWriterResponseLibrary(*solnWriter,physicsBlocks,cm_factory,closure_model_pl,workset_size,user_data);
971 ae_inargs.
alpha = 0.0;
972 ae_inargs.
beta = 1.0;
987 template<
typename ScalarT>
990 Teuchos::RCP<panzer_stk::STK_MeshFactory> mesh_factory;
993 if (mesh_params.get<std::string>(
"Source") ==
"Exodus File") {
994 mesh_factory = Teuchos::rcp(
new panzer_stk::STK_ExodusReaderFactory());
995 mesh_factory->setParameterList(Teuchos::rcp(
new Teuchos::ParameterList(mesh_params.sublist(
"Exodus File"))));
997 else if (mesh_params.get<std::string>(
"Source") ==
"Pamgen Mesh") {
998 mesh_factory = Teuchos::rcp(
new panzer_stk::STK_ExodusReaderFactory());
999 Teuchos::RCP<Teuchos::ParameterList> pamgenList = Teuchos::rcp(
new Teuchos::ParameterList(mesh_params.sublist(
"Pamgen Mesh")));
1000 pamgenList->set(
"File Type",
"Pamgen");
1001 mesh_factory->setParameterList(pamgenList);
1003 else if (mesh_params.get<std::string>(
"Source") ==
"Inline Mesh") {
1005 int dimension = mesh_params.sublist(
"Inline Mesh").get<
int>(
"Mesh Dimension");
1006 std::string typeStr =
"";
1007 if(mesh_params.sublist(
"Inline Mesh").isParameter(
"Type"))
1008 typeStr = mesh_params.sublist(
"Inline Mesh").get<std::string>(
"Type");
1010 if (dimension == 1) {
1012 Teuchos::RCP<Teuchos::ParameterList> in_mesh = Teuchos::rcp(
new Teuchos::ParameterList);
1013 *in_mesh = mesh_params.sublist(
"Inline Mesh").sublist(
"Mesh Factory Parameter List");
1014 mesh_factory->setParameterList(in_mesh);
1016 else if (dimension == 2 && typeStr==
"Tri") {
1018 Teuchos::RCP<Teuchos::ParameterList> in_mesh = Teuchos::rcp(
new Teuchos::ParameterList);
1019 *in_mesh = mesh_params.sublist(
"Inline Mesh").sublist(
"Mesh Factory Parameter List");
1020 mesh_factory->setParameterList(in_mesh);
1022 else if (dimension == 2) {
1024 Teuchos::RCP<Teuchos::ParameterList> in_mesh = Teuchos::rcp(
new Teuchos::ParameterList);
1025 *in_mesh = mesh_params.sublist(
"Inline Mesh").sublist(
"Mesh Factory Parameter List");
1026 mesh_factory->setParameterList(in_mesh);
1028 else if (dimension == 3 && typeStr==
"Tet") {
1030 Teuchos::RCP<Teuchos::ParameterList> in_mesh = Teuchos::rcp(
new Teuchos::ParameterList);
1031 *in_mesh = mesh_params.sublist(
"Inline Mesh").sublist(
"Mesh Factory Parameter List");
1032 mesh_factory->setParameterList(in_mesh);
1034 else if(dimension == 3) {
1036 Teuchos::RCP<Teuchos::ParameterList> in_mesh = Teuchos::rcp(
new Teuchos::ParameterList);
1037 *in_mesh = mesh_params.sublist(
"Inline Mesh").sublist(
"Mesh Factory Parameter List");
1038 mesh_factory->setParameterList(in_mesh);
1040 else if(dimension==4) {
1042 Teuchos::RCP<Teuchos::ParameterList> in_mesh = Teuchos::rcp(
new Teuchos::ParameterList);
1043 *in_mesh = mesh_params.sublist(
"Inline Mesh").sublist(
"Mesh Factory Parameter List");
1044 mesh_factory->setParameterList(in_mesh);
1047 else if (mesh_params.get<std::string>(
"Source") ==
"Custom Mesh") {
1049 mesh_factory->setParameterList(Teuchos::rcp(
new Teuchos::ParameterList(mesh_params.sublist(
"Custom Mesh"))));
1057 if(mesh_params.isSublist(
"Rebalance")) {
1058 const Teuchos::ParameterList & rebalance = mesh_params.sublist(
"Rebalance");
1061 bool enabled =
false;
1062 if(rebalance.isType<
bool>(
"Enabled"))
1063 enabled = rebalance.get<
bool>(
"Enabled");
1066 Teuchos::RCP<Teuchos::ParameterList> rebalanceCycles;
1067 if(enabled && rebalance.isSublist(
"Cycles"))
1068 rebalanceCycles = Teuchos::rcp(
new Teuchos::ParameterList(rebalance.sublist(
"Cycles")));
1071 mesh_factory->enableRebalance(enabled,rebalanceCycles);
1074 return mesh_factory;
1077 template<
typename ScalarT>
1079 const std::vector<Teuchos::RCP<panzer::PhysicsBlock> > & physicsBlocks,
1085 std::vector<Teuchos::RCP<panzer::PhysicsBlock> >::const_iterator physIter;
1086 for(physIter=physicsBlocks.begin();physIter!=physicsBlocks.end();++physIter) {
1088 double blockWeight = 0.0;
1090 Teuchos::RCP<const panzer::PhysicsBlock> pb = *physIter;
1091 const std::vector<panzer::StrPureBasisPair> & blockFields = pb->getProvidedDOFs();
1092 const std::vector<std::vector<std::string> > & coordinateDOFs = pb->getCoordinateDOFs();
1096 std::set<panzer::StrPureBasisPair,panzer::StrPureBasisComp> fieldNames;
1097 fieldNames.insert(blockFields.begin(),blockFields.end());
1102 std::set<std::string> fields_to_remove;
1106 for(std::size_t i=0;i<coordinateDOFs.size();i++) {
1108 for(std::size_t j=0;j<coordinateDOFs[i].size();j++)
1109 fields_to_remove.insert(coordinateDOFs[i][j]);
1113 std::set<std::string>::const_iterator rmItr;
1114 for (rmItr=fields_to_remove.begin();rmItr!=fields_to_remove.end();++rmItr)
1119 std::set<panzer::StrPureBasisPair,panzer::StrPureBasisComp>::const_iterator fieldItr;
1120 for (fieldItr=fieldNames.begin();fieldItr!=fieldNames.end();++fieldItr) {
1122 if(fieldItr->second->isScalarBasis() &&
1124 mesh.
addCellField(fieldItr->first,pb->elementBlockID());
1126 else if(fieldItr->second->isScalarBasis()) {
1129 else if(fieldItr->second->isVectorBasis()) {
1130 std::string d_mod[3] = {
"X",
"Y",
"Z"};
1131 for(
int d=0;d<fieldItr->second->dimension();d++)
1132 mesh.
addCellField(fieldItr->first+d_mod[d],pb->elementBlockID());
1134 else { TEUCHOS_ASSERT(
false); }
1136 blockWeight += double(fieldItr->second->cardinality());
1149 template<
typename ScalarT>
1152 TEUCHOS_TEST_FOR_EXCEPTION(Teuchos::is_null(m_physics_me), std::runtime_error,
1153 "Objects are not built yet! Please call buildObjects() member function.");
1154 return m_physics_me;
1157 template<
typename ScalarT>
1160 m_nox_observer_factory = nox_observer_factory;
1163 template<
typename ScalarT>
1166 m_rythmos_observer_factory = rythmos_observer_factory;
1169#ifdef PANZER_HAVE_TEMPUS
1170 template<
typename ScalarT>
1173 m_tempus_observer_factory = tempus_observer_factory;
1177 template<
typename ScalarT>
1180 m_user_wkst_factory = user_wkst_factory;
1183 template<
typename ScalarT>
1186 if(m_rome_me==Teuchos::null)
1187 m_rome_me = buildResponseOnlyModelEvaluator(m_physics_me,m_global_data);
1192 template<
typename ScalarT>
1195 const Teuchos::RCP<panzer::GlobalData>& global_data,
1197#ifdef PANZER_HAVE_TEMPUS
1198 const Teuchos::RCP<Piro::TempusSolverForwardOnly<ScalarT> > tempusSolver,
1200 const Teuchos::Ptr<const panzer_stk::NOXObserverFactory> & in_nox_observer_factory,
1201 const Teuchos::Ptr<const panzer_stk::RythmosObserverFactory> & in_rythmos_observer_factory
1202#ifdef PANZER_HAVE_TEMPUS
1203 ,
const Teuchos::Ptr<const panzer_stk::TempusObserverFactory> & in_tempus_observer_factory
1207 using Teuchos::is_null;
1210 TEUCHOS_TEST_FOR_EXCEPTION(is_null(m_lin_obj_factory), std::runtime_error,
1211 "Objects are not built yet! Please call buildObjects() member function.");
1212 TEUCHOS_TEST_FOR_EXCEPTION(is_null(m_global_indexer), std::runtime_error,
1213 "Objects are not built yet! Please call buildObjects() member function.");
1214 TEUCHOS_TEST_FOR_EXCEPTION(is_null(m_mesh), std::runtime_error,
1215 "Objects are not built yet! Please call buildObjects() member function.");
1216 Teuchos::Ptr<const panzer_stk::NOXObserverFactory> nox_observer_factory
1217 = is_null(in_nox_observer_factory) ? m_nox_observer_factory.ptr() : in_nox_observer_factory;
1218 Teuchos::Ptr<const panzer_stk::RythmosObserverFactory> rythmos_observer_factory
1219 = is_null(in_rythmos_observer_factory) ? m_rythmos_observer_factory.ptr() : in_rythmos_observer_factory;
1220#ifdef PANZER_HAVE_TEMPUS
1221 Teuchos::Ptr<const panzer_stk::TempusObserverFactory> tempus_observer_factory
1222 = is_null(in_tempus_observer_factory) ? m_tempus_observer_factory.ptr() : in_tempus_observer_factory;
1225 Teuchos::ParameterList& p = *this->getNonconstParameterList();
1226 Teuchos::ParameterList & solncntl_params = p.sublist(
"Solution Control");
1227 Teuchos::RCP<Teuchos::ParameterList> piro_params = Teuchos::rcp(
new Teuchos::ParameterList(solncntl_params));
1228 Teuchos::RCP<Thyra::ModelEvaluatorDefaultBase<double> > piro;
1230 std::string solver = solncntl_params.get<std::string>(
"Piro Solver");
1231 Teuchos::RCP<Thyra::ModelEvaluatorDefaultBase<double> > thyra_me_db
1232 = Teuchos::rcp_dynamic_cast<Thyra::ModelEvaluatorDefaultBase<double> >(thyra_me);
1233 if ( (solver==
"NOX") || (solver ==
"LOCA") ) {
1235 TEUCHOS_TEST_FOR_EXCEPTION(Teuchos::is_null(nox_observer_factory), std::runtime_error,
1236 "No NOX obersver built! Please call setNOXObserverFactory() member function if you plan to use a NOX solver.");
1238 Teuchos::RCP<NOX::Abstract::PrePostOperator> ppo = nox_observer_factory->buildNOXObserver(m_mesh,m_global_indexer,m_lin_obj_factory);
1239 piro_params->sublist(
"NOX").sublist(
"Solver Options").set(
"User Defined Pre/Post Operator", ppo);
1242 piro = Teuchos::rcp(
new Piro::NOXSolver<double>(piro_params,
1243 Teuchos::rcp_dynamic_cast<Thyra::ModelEvaluatorDefaultBase<double> >(thyra_me_db)));
1244 else if (solver ==
"LOCA")
1245 piro = Teuchos::rcp(
new Piro::LOCASolver<double>(piro_params,
1246 Teuchos::rcp_dynamic_cast<Thyra::ModelEvaluatorDefaultBase<double> >(thyra_me_db),
1248 TEUCHOS_ASSERT(nonnull(piro));
1251 piro_params->sublist(
"NOX").sublist(
"Printing").set<Teuchos::RCP<std::ostream> >(
"Output Stream",global_data->os);
1252 piro_params->sublist(
"NOX").sublist(
"Printing").set<Teuchos::RCP<std::ostream> >(
"Error Stream",global_data->os);
1253 piro_params->sublist(
"NOX").sublist(
"Printing").set<
int>(
"Output Processor",global_data->os->getOutputToRootOnly());
1255 else if (solver==
"Rythmos") {
1257 TEUCHOS_TEST_FOR_EXCEPTION(Teuchos::is_null(rythmos_observer_factory), std::runtime_error,
1258 "No Rythmos observer built! Please call setrythmosObserverFactory() member function if you plan to use a Rythmos solver.");
1261 if(rythmos_observer_factory->useNOXObserver()) {
1262 Teuchos::RCP<NOX::Abstract::PrePostOperator> ppo = nox_observer_factory->buildNOXObserver(m_mesh,m_global_indexer,m_lin_obj_factory);
1263 piro_params->sublist(
"NOX").sublist(
"Solver Options").set(
"User Defined Pre/Post Operator", ppo);
1267 piro_params->sublist(
"NOX").sublist(
"Printing").set<Teuchos::RCP<std::ostream> >(
"Output Stream",global_data->os);
1268 piro_params->sublist(
"NOX").sublist(
"Printing").set<Teuchos::RCP<std::ostream> >(
"Error Stream",global_data->os);
1269 piro_params->sublist(
"NOX").sublist(
"Printing").set<
int>(
"Output Processor",global_data->os->getOutputToRootOnly());
1272 Teuchos::RCP<Piro::RythmosSolver<double> > piro_rythmos;
1273 if(rythmosSolver==Teuchos::null)
1276 piro_rythmos = rythmosSolver;
1279 Teuchos::RCP<Thyra::ModelEvaluator<ScalarT> > rythmos_me = thyra_me;
1280 const std::string stepper_type = piro_params->sublist(
"Rythmos").get<std::string>(
"Stepper Type");
1281 if(stepper_type==
"Explicit RK" || stepper_type==
"Forward Euler") {
1282 const Teuchos::ParameterList & assembly_params = p.sublist(
"Assembly");
1283 bool lumpExplicitMass = assembly_params.get<
bool>(
"Lump Explicit Mass");
1287 piro_rythmos->initialize(piro_params, rythmos_me, rythmos_observer_factory->buildRythmosObserver(m_mesh,m_global_indexer,m_lin_obj_factory));
1289 piro = piro_rythmos;
1291#ifdef PANZER_HAVE_TEMPUS
1292 else if (solver==
"Tempus") {
1294 TEUCHOS_TEST_FOR_EXCEPTION(Teuchos::is_null(tempus_observer_factory), std::runtime_error,
1295 "No Tempus observer built! Please call setTempusObserverFactory() member function if you plan to use a Tempus solver.");
1298 if(tempus_observer_factory->useNOXObserver()) {
1299 Teuchos::RCP<NOX::Abstract::PrePostOperator> ppo = nox_observer_factory->buildNOXObserver(m_mesh,m_global_indexer,m_lin_obj_factory);
1300 piro_params->sublist(
"NOX").sublist(
"Solver Options").set(
"User Defined Pre/Post Operator", ppo);
1304 piro_params->sublist(
"NOX").sublist(
"Printing").set<Teuchos::RCP<std::ostream> >(
"Output Stream",global_data->os);
1305 piro_params->sublist(
"NOX").sublist(
"Printing").set<Teuchos::RCP<std::ostream> >(
"Error Stream",global_data->os);
1306 piro_params->sublist(
"NOX").sublist(
"Printing").set<
int>(
"Output Processor",global_data->os->getOutputToRootOnly());
1309 Teuchos::RCP<Piro::TempusSolverForwardOnly<double> > piro_tempus;
1311 if(tempusSolver==Teuchos::null)
1314 Teuchos::rcp(
new Piro::TempusSolverForwardOnly<double>(piro_params, thyra_me,
1315 tempus_observer_factory->buildTempusObserver(m_mesh,m_global_indexer,m_lin_obj_factory)));
1319 piro_tempus = tempusSolver;
1320 piro_tempus->initialize(piro_params, thyra_me,
1321 tempus_observer_factory->buildTempusObserver(m_mesh,m_global_indexer,m_lin_obj_factory));
1328 TEUCHOS_TEST_FOR_EXCEPTION(
true, std::logic_error,
1329 "Error: Unknown Piro Solver : " << solver);
1334 template<
typename ScalarT>
1337 TEUCHOS_TEST_FOR_EXCEPTION(Teuchos::is_null(m_response_library), std::runtime_error,
1338 "Objects are not built yet! Please call buildObjects() member function.");
1340 return m_response_library;
1343 template<
typename ScalarT>
1346 TEUCHOS_TEST_FOR_EXCEPTION(m_physics_blocks.size()==0, std::runtime_error,
1347 "Objects are not built yet! Please call buildObjects() member function.");
1349 return m_physics_blocks;
1352 template<
typename ScalarT>
1353 Teuchos::RCP<panzer::FieldManagerBuilder>
1356 const std::vector<Teuchos::RCP<panzer::PhysicsBlock> >& physicsBlocks,
1357 const std::vector<panzer::BC> & bcs,
1362 const Teuchos::ParameterList& closure_models,
1364 const Teuchos::ParameterList& user_data,
1365 bool writeGraph,
const std::string & graphPrefix,
1366 bool write_field_managers,
const std::string & field_manager_prefix)
const
1369 fmb->setWorksetContainer(wc);
1370 fmb->setupVolumeFieldManagers(physicsBlocks,volume_cm_factory,closure_models,lo_factory,user_data);
1371 fmb->setupBCFieldManagers(bcs,physicsBlocks,eqset_factory,bc_cm_factory,bc_factory,closure_models,lo_factory,user_data);
1375 fmb->writeVolumeGraphvizDependencyFiles(graphPrefix, physicsBlocks);
1376 fmb->writeBCGraphvizDependencyFiles(graphPrefix);
1378 if (write_field_managers){
1379 fmb->writeVolumeTextDependencyFiles(graphPrefix, physicsBlocks);
1380 fmb->writeBCTextDependencyFiles(field_manager_prefix);
1386 template<
typename ScalarT>
1387 Teuchos::RCP<Thyra::ModelEvaluator<double> >
1390 const Teuchos::RCP<Teuchos::ParameterList> & physics_block_plist,
1391 const Teuchos::RCP<const panzer::EquationSetFactory>& eqset_factory,
1394 bool is_transient,
bool is_explicit,
1395 const Teuchos::Ptr<const Teuchos::ParameterList> & bc_list,
1400 Teuchos::RCP<Thyra::ModelEvaluator<ScalarT> > physics_me = physics_me_in==Teuchos::null ? m_physics_me : physics_me_in;
1402 const Teuchos::ParameterList& p = *this->getParameterList();
1405 std::vector<Teuchos::RCP<panzer::PhysicsBlock> > physicsBlocks;
1407 const Teuchos::ParameterList & assembly_params = p.sublist(
"Assembly");
1410 std::map<std::string,std::string> block_ids_to_physics_ids;
1414 std::map<std::string,Teuchos::RCP<const shards::CellTopology> > block_ids_to_cell_topo;
1415 for(std::map<std::string,std::string>::const_iterator itr=block_ids_to_physics_ids.begin();
1416 itr!=block_ids_to_physics_ids.end();++itr) {
1417 block_ids_to_cell_topo[itr->first] = m_mesh->getCellTopology(itr->first);
1418 TEUCHOS_ASSERT(block_ids_to_cell_topo[itr->first]!=Teuchos::null);
1421 std::size_t workset_size = Teuchos::as<std::size_t>(assembly_params.get<
int>(
"Workset Size"));
1423 panzer::buildPhysicsBlocks(block_ids_to_physics_ids,
1424 block_ids_to_cell_topo,
1425 physics_block_plist,
1426 assembly_params.get<
int>(
"Default Integration Order"),
1435 Teuchos::RCP<panzer::FieldManagerBuilder> fmb;
1437 const Teuchos::ParameterList & user_data_params = p.sublist(
"User Data");
1439 bool write_dot_files =
false;
1440 std::string prefix =
"Cloned_";
1442 std::vector<panzer::BC> bcs;
1443 if(bc_list==Teuchos::null) {
1444 panzer::buildBCs(bcs, p.sublist(
"Boundary Conditions"), m_global_data);
1447 panzer::buildBCs(bcs, *bc_list, m_global_data);
1450 fmb = buildFieldManagerBuilder(
1460 p.sublist(
"Closure Models"),
1463 write_dot_files,prefix,
1464 write_dot_files,prefix);
1467 Teuchos::RCP<panzer::ResponseLibrary<panzer::Traits> > response_library
1470 m_lin_obj_factory));
1478 Thyra::ModelEvaluatorBase::InArgs<ScalarT> nomVals = physics_me->getNominalValues();
1481 Teuchos::RCP<Thyra::EpetraModelEvaluator> ep_thyra_me = Teuchos::rcp_dynamic_cast<Thyra::EpetraModelEvaluator>(physics_me);
1482 Teuchos::RCP<PanzerME> panzer_me = Teuchos::rcp_dynamic_cast<PanzerME>(physics_me);
1483 bool useThyra =
true;
1484 if(ep_thyra_me!=Teuchos::null)
1488 std::vector<Teuchos::RCP<Teuchos::Array<std::string> > > p_names(physics_me->Np());
1489 std::vector<Teuchos::RCP<Teuchos::Array<double> > > p_values(physics_me->Np());
1490 for(std::size_t i=0;i<p_names.size();i++) {
1491 p_names[i] = Teuchos::rcp(
new Teuchos::Array<std::string>(*physics_me->get_p_names(i)));
1492 p_values[i] = Teuchos::rcp(
new Teuchos::Array<double>(p_names[i]->size(),0.0));
1495 Teuchos::RCP<Thyra::ModelEvaluatorDefaultBase<double> > thyra_me
1496 = buildPhysicsModelEvaluator(useThyra,
1508 thyra_me->getNominalValues() = nomVals;
1512 const Teuchos::ParameterList & assembly_params = p.sublist(
"Assembly");
1513 bool lumpExplicitMass = assembly_params.get<
bool>(
"Lump Explicit Mass");
1521 template<
typename ScalarT>
1522 Teuchos::RCP<Thyra::ModelEvaluatorDefaultBase<double> >
1525 const Teuchos::RCP<panzer::FieldManagerBuilder> & fmb,
1528 const std::vector<Teuchos::RCP<Teuchos::Array<std::string> > > & p_names,
1529 const std::vector<Teuchos::RCP<Teuchos::Array<double> > > & p_values,
1531 const Teuchos::RCP<panzer::GlobalData> & global_data,
1532 bool is_transient,
double t_init)
const
1534 Teuchos::RCP<Thyra::ModelEvaluatorDefaultBase<double> > thyra_me;
1536 Teuchos::RCP<panzer::ModelEvaluator_Epetra> ep_me
1540 ep_me->set_t_init(t_init);
1543 thyra_me = Thyra::epetraModelEvaluator(ep_me,solverFactory);
1547 (fmb,rLibrary,lof,p_names,p_values,solverFactory,global_data,is_transient,t_init));
1553 template<
typename ScalarT>
1558 Teuchos::ParameterList validPL;
1560 Teuchos::setStringToIntegralParameter<int>(
1563 "Set the start time",
1564 Teuchos::tuple<std::string>(
"From Input File",
"From Exodus File"),
1568 validPL.set<
double>(
"Start Time",0.0);
1571 p.validateParametersAndSetDefaults(validPL);
1573 std::string t_init_type = p.get<std::string>(
"Start Time Type");
1574 double t_init = 10.0;
1576 if (t_init_type ==
"From Input File")
1577 t_init = p.get<
double>(
"Start Time");
1579 if (t_init_type ==
"From Exodus File")
1587 template<
typename ScalarT>
1590 const Teuchos::RCP<const panzer::GlobalIndexer> & ugi,
1592 const Teuchos::RCP<panzer_stk::STK_Interface> & mesh)
const
1594 Teuchos::RCP<panzer::ResponseLibrary<panzer::Traits> > stkIOResponseLibrary
1597 std::vector<std::string> eBlocks;
1598 mesh->getElementBlockNames(eBlocks);
1601 builder.
mesh = mesh;
1602 stkIOResponseLibrary->addResponse(
"Main Field Output",eBlocks,builder);
1604 return stkIOResponseLibrary;
1607 template<
typename ScalarT>
1610 const std::vector<Teuchos::RCP<panzer::PhysicsBlock> > & physicsBlocks,
1612 const Teuchos::ParameterList & closure_models,
1613 int workset_size, Teuchos::ParameterList & user_data)
const
1615 user_data.set<
int>(
"Workset Size",workset_size);
1619 template<
typename ScalarT>
1622 const Teuchos::RCP<const panzer::GlobalIndexer> & globalIndexer,
1623 const Teuchos::RCP<panzer::ConnManager> & conn_manager,
1624 const Teuchos::RCP<panzer_stk::STK_Interface> & mesh,
1626 #ifdef PANZER_HAVE_TEKO
1627 ,
const Teuchos::RCP<Teko::RequestHandler> & reqHandler
1631 const Teuchos::ParameterList & p = *this->getParameterList();
1632 const Teuchos::ParameterList & solncntl_params = p.sublist(
"Solution Control");
1635 Teuchos::RCP<Teuchos::ParameterList> strat_params
1636 = Teuchos::rcp(
new Teuchos::ParameterList(solncntl_params.sublist(
"NOX").sublist(
"Direction").
1637 sublist(
"Newton").sublist(
"Stratimikos Linear Solver").sublist(
"Stratimikos")));
1639 bool writeCoordinates =
false;
1640 if(p.sublist(
"Options").isType<
bool>(
"Write Coordinates"))
1641 writeCoordinates = p.sublist(
"Options").get<
bool>(
"Write Coordinates");
1643 bool writeTopo =
false;
1644 if(p.sublist(
"Options").isType<
bool>(
"Write Topology"))
1645 writeTopo = p.sublist(
"Options").get<
bool>(
"Write Topology");
1649 blockedAssembly,globalIndexer,conn_manager,
1650 Teuchos::as<int>(mesh->getDimension()), mpi_comm, strat_params,
1651 #ifdef PANZER_HAVE_TEKO
1659 template<
typename ScalarT>
1662 const bool write_graphviz_file,
1663 const std::string& graphviz_file_prefix)
1667 Teuchos::ParameterList & p = *this->getNonconstParameterList();
1668 Teuchos::ParameterList & user_data = p.sublist(
"User Data");
1669 Teuchos::ParameterList & closure_models = p.sublist(
"Closure Models");
1672 Teuchos::RCP<Thyra::EpetraModelEvaluator> thyra_me = Teuchos::rcp_dynamic_cast<Thyra::EpetraModelEvaluator>(m_physics_me);
1673 Teuchos::RCP<PanzerME> panzer_me = Teuchos::rcp_dynamic_cast<PanzerME>(m_physics_me);
1675 if(thyra_me!=Teuchos::null && panzer_me==Teuchos::null) {
1676 Teuchos::RCP<const EpetraExt::ModelEvaluator> const_ep_me;
1677 Teuchos::RCP<Thyra::LinearOpWithSolveFactoryBase<double> > solveFactory;
1678 thyra_me->uninitialize(&const_ep_me,&solveFactory);
1681 Teuchos::RCP<EpetraExt::ModelEvaluator> ep_me = Teuchos::rcp_const_cast<EpetraExt::ModelEvaluator>(const_ep_me);
1682 Teuchos::RCP<panzer::ModelEvaluator_Epetra> ep_panzer_me = Teuchos::rcp_dynamic_cast<panzer::ModelEvaluator_Epetra>(ep_me);
1684 ep_panzer_me->buildResponses(m_physics_blocks,*m_eqset_factory,cm_factory,closure_models,user_data,write_graphviz_file,graphviz_file_prefix);
1687 thyra_me->initialize(ep_me,solveFactory);
1691 else if(panzer_me!=Teuchos::null && thyra_me==Teuchos::null) {
1692 panzer_me->buildResponses(m_physics_blocks,*m_eqset_factory,cm_factory,closure_models,user_data,write_graphviz_file,graphviz_file_prefix);
1697 TEUCHOS_ASSERT(
false);
Teuchos::RCP< panzer::LinearObjContainer > ghostedContainer_
bool evaluate_transient_terms
Teuchos::RCP< panzer::LinearObjContainer > container_
void setUseDOFManagerFEI(bool flag)
static bool requiresBlocking(const std::string &fieldorder)
virtual Teuchos::RCP< panzer::GlobalIndexer > buildGlobalIndexer(const Teuchos::RCP< const Teuchos::OpaqueWrapper< MPI_Comm > > &mpiComm, const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const Teuchos::RCP< ConnManager > &connMngr, const std::string &fieldOrder="") const
void setUseDOFManagerFEI(bool flag)
void setUseTieBreak(bool flag)
void setUseNeighbors(bool flag)
virtual Teuchos::RCP< panzer::GlobalIndexer > buildGlobalIndexer(const Teuchos::RCP< const Teuchos::OpaqueWrapper< MPI_Comm > > &mpiComm, const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const Teuchos::RCP< ConnManager > &connMngr, const std::string &fieldOrder="") const
virtual Teuchos::RCP< LinearObjContainer > buildLinearObjContainer() const =0
virtual void readVector(const std::string &identifier, LinearObjContainer &loc, int id) const =0
void buildResponseEvaluators(const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &cm_factory, const Teuchos::ParameterList &closure_models, const Teuchos::ParameterList &user_data, const bool write_graphviz_file=false, const std::string &graphviz_file_prefix="")
Class that provides access to worksets on each element block and side set.
Teuchos::RCP< Thyra::LinearOpWithSolveFactoryBase< double > > buildLOWSFactory(bool blockedAssembly, const Teuchos::RCP< const panzer::GlobalIndexer > &globalIndexer, const Teuchos::RCP< panzer::ConnManager > &conn_manager, const Teuchos::RCP< panzer_stk::STK_Interface > &mesh, const Teuchos::RCP< const Teuchos::MpiComm< int > > &mpi_comm) const
Teuchos::RCP< panzer::ResponseLibrary< panzer::Traits > > getResponseLibrary()
Teuchos::RCP< panzer::ResponseLibrary< panzer::Traits > > initializeSolnWriterResponseLibrary(const Teuchos::RCP< panzer::WorksetContainer > &wc, const Teuchos::RCP< const panzer::GlobalIndexer > &ugi, const Teuchos::RCP< const panzer::LinearObjFactory< panzer::Traits > > &lof, const Teuchos::RCP< panzer_stk::STK_Interface > &mesh) const
void setRythmosObserverFactory(const Teuchos::RCP< const panzer_stk::RythmosObserverFactory > &rythmos_observer_factory)
Teuchos::RCP< panzer::FieldManagerBuilder > buildFieldManagerBuilder(const Teuchos::RCP< panzer::WorksetContainer > &wc, const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const std::vector< panzer::BC > &bcs, const panzer::EquationSetFactory &eqset_factory, const panzer::BCStrategyFactory &bc_factory, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &volume_cm_factory, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &bc_cm_factory, const Teuchos::ParameterList &closure_models, const panzer::LinearObjFactory< panzer::Traits > &lo_factory, const Teuchos::ParameterList &user_data, bool writeGraph, const std::string &graphPrefix, bool write_field_managers, const std::string &field_manager_prefix) const
Teuchos::RCP< Thyra::ModelEvaluator< ScalarT > > buildResponseOnlyModelEvaluator(const Teuchos::RCP< Thyra::ModelEvaluator< ScalarT > > &thyra_me, const Teuchos::RCP< panzer::GlobalData > &global_data, const Teuchos::RCP< Piro::RythmosSolver< ScalarT > > rythmosSolver=Teuchos::null, const Teuchos::Ptr< const panzer_stk::NOXObserverFactory > &in_nox_observer_factory=Teuchos::null, const Teuchos::Ptr< const panzer_stk::RythmosObserverFactory > &in_rythmos_observer_factory=Teuchos::null)
double getInitialTime(Teuchos::ParameterList &transient_ic_params, const panzer_stk::STK_Interface &mesh) const
Gets the initial time from either the input parameter list or an exodus file.
void finalizeMeshConstruction(const STK_MeshFactory &mesh_factory, const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const Teuchos::MpiComm< int > mpi_comm, STK_Interface &mesh) const
Teuchos::RCP< Thyra::ModelEvaluator< ScalarT > > getResponseOnlyModelEvaluator()
void buildObjects(const Teuchos::RCP< const Teuchos::Comm< int > > &comm, const Teuchos::RCP< panzer::GlobalData > &global_data, const Teuchos::RCP< const panzer::EquationSetFactory > &eqset_factory, const panzer::BCStrategyFactory &bc_factory, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &cm_factory, bool meConstructionOn=true)
Builds the model evaluators for a panzer assembly.
void addUserFieldsToMesh(panzer_stk::STK_Interface &mesh, const Teuchos::ParameterList &output_list) const
Add the user fields specified by output_list to the mesh.
Teuchos::RCP< Thyra::ModelEvaluator< double > > cloneWithNewPhysicsBlocks(const Teuchos::RCP< Thyra::LinearOpWithSolveFactoryBase< ScalarT > > &solverFactory, const Teuchos::RCP< Teuchos::ParameterList > &physics_block_plist, const Teuchos::RCP< const panzer::EquationSetFactory > &eqset_factory, const panzer::BCStrategyFactory &bc_factory, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &user_cm_factory, bool is_transient, bool is_explicit, const Teuchos::Ptr< const Teuchos::ParameterList > &bc_list=Teuchos::null, const Teuchos::RCP< Thyra::ModelEvaluator< ScalarT > > &physics_me=Teuchos::null) const
void buildResponses(const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &cm_factory, const bool write_graphviz_file=false, const std::string &graphviz_file_prefix="")
void setParameterList(Teuchos::RCP< Teuchos::ParameterList > const ¶mList)
void setupInitialConditions(Thyra::ModelEvaluator< ScalarT > &model, panzer::WorksetContainer &wkstContainer, const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &cm_factory, const panzer::LinearObjFactory< panzer::Traits > &lof, const Teuchos::ParameterList &closure_pl, const Teuchos::ParameterList &initial_cond_pl, const Teuchos::ParameterList &user_data_pl, bool write_dot_files, const std::string &dot_file_prefix) const
Setup the initial conditions in a model evaluator. Note that this is entirely self contained.
void setUserWorksetFactory(Teuchos::RCP< panzer_stk::WorksetFactory > &user_wkst_factory)
Set user defined workset factory.
const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > & getPhysicsBlocks() const
Teuchos::RCP< Thyra::ModelEvaluator< ScalarT > > getPhysicsModelEvaluator()
Teuchos::RCP< STK_MeshFactory > buildSTKMeshFactory(const Teuchos::ParameterList &mesh_params) const
build STK mesh factory from a mesh parameter list
void setNOXObserverFactory(const Teuchos::RCP< const panzer_stk::NOXObserverFactory > &nox_observer_factory)
void finalizeSolnWriterResponseLibrary(panzer::ResponseLibrary< panzer::Traits > &rl, const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &cm_factory, const Teuchos::ParameterList &closure_models, int workset_size, Teuchos::ParameterList &user_data) const
Teuchos::RCP< Thyra::ModelEvaluatorDefaultBase< double > > buildPhysicsModelEvaluator(bool buildThyraME, const Teuchos::RCP< panzer::FieldManagerBuilder > &fmb, const Teuchos::RCP< panzer::ResponseLibrary< panzer::Traits > > &rLibrary, const Teuchos::RCP< panzer::LinearObjFactory< panzer::Traits > > &lof, const std::vector< Teuchos::RCP< Teuchos::Array< std::string > > > &p_names, const std::vector< Teuchos::RCP< Teuchos::Array< double > > > &p_values, const Teuchos::RCP< Thyra::LinearOpWithSolveFactoryBase< ScalarT > > &solverFactory, const Teuchos::RCP< panzer::GlobalData > &global_data, bool is_transient, double t_init) const
Teuchos::RCP< const Teuchos::ParameterList > getValidParameters() const
void writeInitialConditions(const Thyra::ModelEvaluator< ScalarT > &model, const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const Teuchos::RCP< panzer::WorksetContainer > &wc, const Teuchos::RCP< const panzer::GlobalIndexer > &ugi, const Teuchos::RCP< const panzer::LinearObjFactory< panzer::Traits > > &lof, const Teuchos::RCP< panzer_stk::STK_Interface > &mesh, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &cm_factory, const Teuchos::ParameterList &closure_model_pl, const Teuchos::ParameterList &user_data_pl, int workset_size) const
Write the initial conditions to exodus. Note that this is entirely self contained.
void setBlockWeight(const std::string &blockId, double weight)
void addCellField(const std::string &fieldName, const std::string &blockId)
double getInitialStateTime() const
void addMeshCoordFields(const std::string &blockId, const std::vector< std::string > &coordField, const std::string &dispPrefix)
unsigned getDimension() const
get the dimension
void addSolutionField(const std::string &fieldName, const std::string &blockId)
virtual void completeMeshConstruction(STK_Interface &mesh, stk::ParallelMachine parallelMach) const =0
Teuchos::RCP< Thyra::LinearOpWithSolveFactoryBase< double > > buildLOWSFactory(bool blockedAssembly, const Teuchos::RCP< const panzer::GlobalIndexer > &globalIndexer, const Teuchos::RCP< panzer_stk::STKConnManager > &stkConn_manager, int spatialDim, const Teuchos::RCP< const Teuchos::MpiComm< int > > &mpi_comm, const Teuchos::RCP< Teuchos::ParameterList > &strat_params, bool writeCoordinates, bool writeTopo, const Teuchos::RCP< const panzer::GlobalIndexer > &auxGlobalIndexer, bool useCoordinates)
void TokensToInts(std::vector< int > &values, const std::vector< std::string > &tokens)
Turn a vector of tokens into a vector of ints.
WorksetDescriptor blockDescriptor(const std::string &eBlock)
void StringTokenizer(std::vector< std::string > &tokens, const std::string &str, const std::string delimiters, bool trim)
Tokenize a string, put tokens in a vector.
void evaluateInitialCondition(WorksetContainer &wkstContainer, const std::map< std::string, Teuchos::RCP< PHX::FieldManager< panzer::Traits > > > &phx_ic_field_managers, Teuchos::RCP< panzer::LinearObjContainer > loc, const panzer::LinearObjFactory< panzer::Traits > &lo_factory, const double time_stamp)
std::pair< std::string, Teuchos::RCP< panzer::PureBasis > > StrPureBasisPair
void registerScalarParameter(const std::string name, panzer::ParamLib &pl, double realValue)
void buildBlockIdToPhysicsIdMap(std::map< std::string, std::string > &b_to_p, const Teuchos::ParameterList &p)
void setupInitialConditionFieldManagers(WorksetContainer &wkstContainer, const std::vector< Teuchos::RCP< panzer::PhysicsBlock > > &physicsBlocks, const panzer::ClosureModelFactory_TemplateManager< panzer::Traits > &cm_factory, const Teuchos::ParameterList &ic_block_closure_models, const panzer::LinearObjFactory< panzer::Traits > &lo_factory, const Teuchos::ParameterList &user_data, const bool write_graphviz_file, const std::string &graphviz_file_prefix, std::map< std::string, Teuchos::RCP< PHX::FieldManager< panzer::Traits > > > &phx_ic_field_managers)
Builds PHX::FieldManager objects for inital conditions and registers evaluators.
Interface for constructing a BCStrategy_TemplateManager.
Allocates and initializes an equation set template manager.
Teuchos::RCP< panzer_stk::STK_Interface > mesh